Welcome to Andy’s Brain Book!

This book, Andy’s Brain Book, is intended for both beginners and more advanced neuroimagers. We will start with basic fMRI analysis, with more advanced analyses being added later. It is the ReadTheDocs companion to Andy’s Brain Blog.

If you are completely new to fMRI analysis, I recommend starting with the installation page.

Install

• Overview

Unix for Neuroimagers

• What is Unix?
• Unix Tutorial #1: Navigating the directory tree
• Unix Tutorial #2: Copying and Removing Files
• Unix Tutorial #3: Reading Text Files
• Unix Tutorial #4: Shells and Path Variables

fMRI Short Course

• Introduction
• fMRI Tutorial #1: Downloading the Data
• fMRI Tutorial #2: Overview of The Flanker Task
• fMRI Tutorial #3: Looking at the Data

ROI Analysis

• ROI Analysis

Glossary

• Glossary